Technical Skills

Computational and laboratory expertise

Bioinformatics

  • Command line scripting (Linux/Bash)
  • Bacteria Genomics: QC, assembly, annotation
  • AMR gene detection: Abricate, CARD, ResFinder
  • Comparative genomics: Pangenome analysis (Roary)
  • Genomic surveillance: Pathogenwatch, Kleborate
  • Metagenomics and 16S analysis
  • RNA-Seq and Single-Cell Transcriptomics

Data Science

  • R programming, Python, MATLAB
  • Statistical analysis with SPSS, GraphPad Prism
  • Geospatial data analysis and mapping
  • Machine Learning: Neural networks for biomedical prediction
  • Data visualization with Tableau, Power BI

Laboratory Techniques

  • Whole Genome Sequencing (Oxford Nanopore)
  • Bacterial culture and identification
  • DNA extraction (magnetic beads)
  • Antimicrobial susceptibility testing
  • PCR and Gel Electrophoresis